<!-- ====== HERO ====== -->
<section class="py-md-4">
<div class="container">
<h1 class="display-4 font-weight-bold lh-tight">
Arx, your
<span class="text-brand">microbial genome</span><br/>
center for research efficiency.
</h1>
</div>
</section>
<!-- ====== TOOLS GRID ====== -->
<section id="tools" >
<div class="container">
<div class="row">
<div class="col-12 col-sm-6 col-lg-3 mb-4">
<a class="tool-card d-block h-100 p-4 rounded-lg shadow-sm" href="pathway">
<div class="tool-icon mb-3">
<!-- new icon path -->
<img alt="Pathways" src="/static/global/ionicons/ios-git-branch.svg">
</div>
<h5 class="mb-1">Pathways</h5>
<p class="small text-muted mb-0">Unlock hidden metabolic & regulatory pathways to accelerate discoveries.</p>
</a>
</div>
<div class="col-12 col-sm-6 col-lg-3 mb-4">
<a class="tool-card d-block h-100 p-4 rounded-lg shadow-sm" href="annotation-search">
<div class="tool-icon mb-3">
<!-- new icon path -->
<img alt="Annotation search" src="/static/global/ionicons/md-pricetag.svg">
</div>
<h5 class="mb-1">Annotation search</h5>
<p class="small text-muted mb-0">Find genes and annotations across genomes in seconds.</p>
</a>
</div>
<div class="col-12 col-sm-6 col-lg-3 mb-4">
<a class="tool-card d-block h-100 p-4 rounded-lg shadow-sm" href="flower-plot">
<div class="tool-icon mb-3">
<!-- new icon path -->
<img alt="Flower plot" src="/static/global/customicons/flower-plot.svg">
</div>
<h5 class="mb-1">Flower plot</h5>
<p class="small text-muted mb-0">Visualize core and accessory genomes at a glance.</p>
</a>
</div>
<div class="col-12 col-sm-6 col-lg-3 mb-4">
<a class="tool-card d-block h-100 p-4 rounded-lg shadow-sm" href="compare-genes">
<div class="tool-icon mb-3">
<!-- new icon path -->
<img alt="Compare genes" src="/static/global/customicons/gene-comparison.svg">
</div>
<h5 class="mb-1">Compare genes</h5>
<p class="small text-muted mb-0">Align and contrast homologs across selected genomes.</p>
</a>
</div>
<div class="col-12 col-sm-6 col-lg-3 mb-4">
<a class="tool-card d-block h-100 p-4 rounded-lg shadow-sm" href="gene-trait-matching">
<div class="tool-icon mb-3">
<!-- new icon path -->
<img alt="Gene trait matching" src="/static/global/ionicons/ios-star-half.svg">
</div>
<h5 class="mb-1">Gene trait matching</h5>
<p class="small text-muted mb-0">Associate genotype patterns with phenotypic traits.</p>
</a>
</div>
<div class="col-12 col-sm-6 col-lg-3 mb-4">
<a class="tool-card d-block h-100 p-4 rounded-lg shadow-sm" href="blast">
<div class="tool-icon mb-3">
<!-- new icon path -->
<img alt="Blast" src="/static/global/customicons/blast.svg">
</div>
<h5 class="mb-1">Blast</h5>
<p class="small text-muted mb-0">Run rapid sequence similarity searches.</p>
</a>
</div>
<div class="col-12 col-sm-6 col-lg-3 mb-4">
<a class="tool-card d-block h-100 p-4 rounded-lg shadow-sm" href="trees">
<div class="tool-icon mb-3">
<!-- new icon path -->
<img alt="Trees" src="/static/global/customicons/upsidedown-tree.svg">
</div>
<h5 class="mb-1">Trees</h5>
<p class="small text-muted mb-0">Build and explore phylogenetic relationships.</p>
</a>
</div>
<div class="col-12 col-sm-6 col-lg-3 mb-4">
<a class="tool-card d-block h-100 p-4 rounded-lg shadow-sm" href="dotplot">
<div class="tool-icon mb-3">
<!-- new icon path -->
<img alt="Dot plot" src="/static/global/customicons/dotplot.svg">
</div>
<h5 class="mb-1">Dot plot</h5>
<p class="small text-muted mb-0">Compare long sequences for rearrangements and repeats.</p>
</a>
</div>
</div>
</div>
</section>
<!-- ====== LOCAL STYLES (old look, no CSS variables) ====== -->
<style>
.lh-tight { line-height: 1.1; }
.btn-pill { border-radius: 9999px; padding: .6rem 1.25rem; }
/* Brand accent (purple gradient like on test site) */
.text-brand {
background: linear-gradient(90deg, #8a5cf6 0%, #7a44ff 100%);
-webkit-background-clip: text; background-clip: text; color: transparent;
}
/* Cards */
.tool-card {
border: 1px solid rgba(0,0,0,.06);
transition: transform .15s ease, box-shadow .15s ease, border-color .15s ease;
background: #e0e0e0;
border-radius: 1rem;
}
.tool-card:hover {
transform: translateY(-2px);
box-shadow: 0 .75rem 1.5rem rgba(18, 38, 63, .08);
border-color: rgba(138,92,246,.35);
text-decoration: none;
}
.tool-card--active {
box-shadow: 0 .5rem 1rem rgba(122, 68, 255, .15);
border-color: rgba(122,68,255,.35);
}
.tool-card h5 { font-weight: 700; }
/* Icon pills (green bubble behind icons) */
.tool-icon {
width: 46px; height: 46px;
border-radius: 50%;
background: #a8ffb4; /* bright green bubble */
display: flex; align-items: center; justify-content: center;
}
.tool-icon img { width: 22px; height: 22px; display: block; filter: none; }
/* Section spacing to match old */
.py-md-6 { padding-top: 4.5rem; padding-bottom: 4.5rem; }
@media (min-width: 992px){ .display-5{ font-size: 2.5rem; } }
/* Buttons (keep Bootstrap defaults, just pills above) */
.btn-success { background-color: #28a745; border-color: #28a745; }
.btn-success:hover { background-color: #218838; border-color: #1e7e34; }
.btn-outline-success {
color: #28a745;
border-color: #28a745;
}
.btn-outline-success:hover {
color: #fff;
background-color: #28a745;
border-color: #28a745;
}
/* Background white helper */
.bg-white { background: #fff; }
</style>
